Research workbench
Structure of the C-terminal domain of EHD1 with fnyestgpftak
Analyse Structure of the C-terminal domain of EHD1 with fnyestgpftak in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KFH
- Type
- protein
- Length
- 117 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Eh domain-containing protein 1; RAB11-FIP2 gpf peptide fnyestgpftak
- UniProt
- Q9H4M9
- Ligands
- CA
- Pockets
- 1 · best druggability 0.38
Structure
solution nmr · 2 distinct chains · 40% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Eh domain-containing protein 1 | protein | 105 | 45% helix, 5% strand | Q9H4M9 |
| B | RAB11-FIP2 gpf peptide fnyestgpftak | protein | 12 | 0% helix, 0% strand | — |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.38 | 0.78 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 276 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 2KFH · Structure of the C-terminal domain of EHD1 with FNYESTGPFTAK · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H4M9 · AlphaFold monomer V2.0 prediction for eh domain-containing protein 1 (Q9H4M9) · a predicted model of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H4M9
- Elsewhere: RCSB PDB 2KFH · PDBe 2KFH · UniProt Q9H4M9
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