Research workbench
Solution structure of plaa family ubiquitin binding domain (pfuc) cis isomer in complex with ubiquitin
Analyse Solution structure of plaa family ubiquitin binding domain (pfuc) cis isomer in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2K8B
- Type
- protein
- Length
- 156 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin; Phospholipase a-2-activating protein
- UniProt
- P62988, Q9Y263
- Pockets
- 1 · best druggability 0.51
Structure
solution nmr · 2 distinct chains · 24% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin | protein | 76 | 14% helix, 34% strand | P62988 |
| B | Phospholipase a-2-activating protein | protein | 80 | 34% helix, 20% strand | Q9Y263 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.51 | 0.84 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 775 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 2K8B · Solution structure of PLAA family ubiquitin binding domain (PFUC) cis isomer in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y263 · AlphaFold monomer V2.0 prediction for phospholipase a-2-activating protein (Q9Y263) · a predicted model of the same protein · chain B against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P62988
- Every structure of UniProt Q9Y263
- Elsewhere: RCSB PDB 2K8B · PDBe 2K8B · UniProt P62988 · UniProt Q9Y263
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.