Research workbench
NMR solution structure of the 4:1 distamycin A/[D(TGGGGT)]4 complex
Analyse NMR solution structure of the 4:1 distamycin A/[D(TGGGGT)]4 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JT7
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3')
- Ligands
- DMY
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, F | DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3') | dna | 6 | — | — |
Ligands and binding sites
- DMY · Distamycin A · ligand · 4 copies · chains A, E, B, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
6 interfaces between chains.
- B–E · 356 Ų buried · 20 hydrogen bonds · nucleic-nucleic
- A–F · 302 Ų buried · 17 hydrogen bonds · nucleic-nucleic
- A–E · 286 Ų buried · 15 hydrogen bonds · nucleic-nucleic
- B–F · 272 Ų buried · 16 hydrogen bonds · nucleic-nucleic
- A–B · 59 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 2JT7 · NMR solution structure of the 4:1 distamycin A/[d(TGGGGT)]4 complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2JT7 · PDBe 2JT7
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