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Ligand · DMY

DMY · Distamycin A

DMY, Distamycin A (C22 H27 N9 O4, 481.5 g/mol), in the MolNFT structures on GenesisL1: bound in 26 records (13 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DMY
Formula
C22 H27 N9 O4
Class
ligand
Structures
26
PDB entries
13

Binding sites

DMY in 26 structures; the first of them:

  • 159D · Side by side binding of two distamycin a drugs in the minor groove of an alternating… · DMY A9 · binds DI1, DC2, DI3
  • 1JTL · The crystal structure of d(GGCCAATTGG) Complexed with Distamycin · DMY B31 · binds DC4, DA5, DA6, DT7, DT8, DG9, DA25, DA26 and 4 more
  • 1JUX · 1.6A Resolution Crystal Structures of the DNA Octamers d(IUATATAC) and… · DMY A45 · binds DI1, DT2, DI3
  • 1K2Z · The Crystal Structure of d(GGCCAATTGG) Complexed with Distamycin. · DMY A21 · binds DA5, DA6, DT7, DT8, DG9, DG10, DC14, DA15 and 4 more
  • 216D · Crystal structures of the B-form DNA-RNA chimer… · DMY A9 · binds DI1, C2, DI3
  • 217D · Crystal structures of the B-form DNA-RNA chimer… · DMY A9 · binds DI1, C2, DI3
  • 267D · Structural studies on nucleic acids · DMY B25 · binds DG4, DA5, DA6, DT7, DT8, 5CM9, DG16, DA17 and 4 more
  • 2DND · A bifurcated hydrogen-bonded conformation in the D(A.T) base pairs of the DNA dodecamer… · DMY A25 · binds DA4, DA5, DA6, DT7, DT8, DT9, DG10, DA17 and 6 more
  • 2JT7 · NMR solution structure of the 4:1 distamycin A/[d(TGGGGT)]4 complex · DMY A7 · binds DT1, DG2, DG3, DG4, DG5, DG2, DG3, DG4
  • 304D · Side-by-side binding of distamycin molecules to D(ICATATIC) in the monoclinic form · DMY A9 · binds DI1, DC2, DA3
  • 305D · Side-by-side binding of distamycin molecules to D(ICATATIC) in the tetragonal form · DMY A9 · binds DI1, DC2, DA3
  • 306D · Side-by-side binding of distamycin molecules to D(ICITACIC) · DMY A9 · binds DI1, DC2, DI3
  • 378D · Structure of the side-by-side binding of distamycin to DNA · DMY A34 · binds DA3, DT4, DA5, DT6, DA7, DC8, DG9, DT10 and 2 more
  • 159D · Side by side binding of two distamycin a drugs in the minor groove of an alternating… · DMY A9 · binds DI1, DC2, DI3
  • 1JTL · The crystal structure of D(GGCCAATTGG) complexed with distamycin · DMY B31 · binds DC4, DA5, DA6, DT7, DT8, DG9, DA25, DA26 and 4 more
  • 1JUX · 1.6A resolution crystal structures of the DNA octamers D(IUATATAC) and… · DMY A45 · binds DI1, DT2, DI3
  • 1K2Z · The crystal structure of D(GGCCAATTGG) complexed with distamycin. · DMY A21 · binds DA5, DA6, DT7, DT8, DG9, DG10, DC14, DA15 and 4 more
  • 216D · Crystal structures of the B-form DNA-RNA chimer (5'-D(*IP*)… · DMY A9 · binds DI1, C2, DI3
  • 217D · Crystal structures of the B-form DNA-RNA chimer (5'-D(*IP*)… · DMY A9 · binds DI1, C2, DI3
  • 267D · Structural studies on nucleic acids · DMY B25 · binds DG4, DA5, DA6, DT7, DT8, 5CM9, DG16, DA17 and 4 more
  • 2DND · A bifurcated hydrogen-bonded conformation in the D(A.T) base pairs of the DNA dodecamer… · DMY A25 · binds DA4, DA5, DA6, DT7, DT8, DT9, DG10, DA17 and 6 more
  • 2JT7 · NMR solution structure of the 4:1 distamycin A/[D(TGGGGT)]4 complex · DMY A7 · binds DT1, DG2, DG3, DG4, DG5, DG2, DG3, DG4
  • 304D · Side-by-side binding of distamycin molecules to D(ICATATIC) in the monoclinic form · DMY A9 · binds DI1, DC2, DA3
  • 305D · Side-by-side binding of distamycin molecules to D(ICATATIC) in the tetragonal form · DMY A9 · binds DI1, DC2, DA3
  • 306D · Side-by-side binding of distamycin molecules to D(ICITACIC) · DMY A9 · binds DI1, DC2, DI3
  • 378D · Structure of the side-by-side binding of distamycin to DNA · DMY A34 · binds DA3, DT4, DA5, DT6, DA7, DC8, DG9, DT10 and 2 more

Residues it binds most

DG 24, DT 26, DA 20, DI 14, DC 22, 5CM 2, C 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion

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