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PAC1-rshort N-terminal ec domain PACAP(6-38) complex

Analyse PAC1-rshort N-terminal ec domain PACAP(6-38) complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2JOD
Type
protein
Length
139 residues
Chains
2
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Pituitary adenylate cyclase-activating polypeptide type I receptor; Pituitary adenylate…
UniProt
P41586, P18509

Structure

solution nmr · 2 distinct chains · 24% helix, 10% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APituitary adenylate cyclase-activating polypeptide type I receptorprotein10617% helix, 13% strandP41586
BPituitary adenylate cyclase-activating polypeptideprotein3348% helix, 0% strandP18509

Interfaces

1 interface between chains.

  • A–B · 1347 Ų buried · 26 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

  • 2JOD · Pac1-Rshort N-terminal EC domain Pacap(6-38) complex · the same entry in another collection · chain A against A, TM-score 1.00
  • P41586 · AlphaFold monomer V2.0 prediction for pituitary adenylate cyclase- activating polypeptide… · a predicted model of the same protein · chain A against A, TM-score 0.55
  • P18509 · AlphaFold monomer V2.0 prediction for pituitary adenylate cyclase- activating polypeptide… · a predicted model of the same protein · chain B against A, TM-score 0.40

Analyse

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