Research workbench
Solution structure of matrix metalloproteinase 3 (mmp-3) in the presence of N-isobutyl-N-[4-METHOXYPHENYLSULFONYL]GLYCYL hydroxamic acid (nngh)
Analyse Solution structure of matrix metalloproteinase 3 (mmp-3) in the presence of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JNP
- Type
- protein
- Length
- 161 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix metalloproteinase-3
- EC
- 3.4.24.17
- UniProt
- P08254
- Ligands
- NGH, ZN, CA
- Pockets
- 1 · best druggability 0.66
Structure
solution nmr · 1 distinct chain · 26% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix metalloproteinase-3 (EC 3.4.24.17) | protein | 161 | 26% helix, 18% strand | P08254 |
Ligands and binding sites
- NGH · N-isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.66 | 0.83 | 35 | ZN, NGH |
Compared structures
- 2JNP · Solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of… · the same entry in another collection · chain A against A, TM-score 1.00
- P08254 · AlphaFold monomer V2.0 prediction for stromelysin-1 (P08254) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08254
- Elsewhere: RCSB PDB 2JNP · PDBe 2JNP · UniProt P08254
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