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Structure of globular heads of M-ficolin complexed with sialic acid

Analyse Structure of globular heads of M-ficolin complexed with sialic acid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2JHL
Type: protein
Length: 217 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ficolin-1
UniProt: O00602
Ligands: SLB, CA

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
F	Ficolin-1	protein	217	18% helix, 32% strand	O00602

Ligands and binding sites

SLB · N-acetyl-beta-neuraminic acid · sugar · chains F
CA · Calcium ion · metal · chains F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

2JHL · Structure of globular heads of M-ficolin complexed with sialic acid · the same entry in another collection · chain F against F, TM-score 1.00
O00602 · AlphaFold monomer V2.0 prediction for ficolin-1 (O00602) · a predicted model of the same protein · chain F against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O00602
Elsewhere: RCSB PDB 2JHL · PDBe 2JHL · UniProt O00602

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