Research workbench
Crystal structure of escherichia COLI glutamate racemase in complex with L-glutamate and activator udp-murnac-ala
Analyse Crystal structure of escherichia COLI glutamate racemase in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JFN
- Type
- protein
- Length
- 266 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate racemase
- EC
- 5.1.1.3
- UniProt
- P22634
- Ligands
- GLU, UMA
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate racemase (EC 5.1.1.3) | protein | 266 | 45% helix, 18% strand | P22634 |
Ligands and binding sites
- GLU · Glutamic acid · ligand · chains A
- UMA · Uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.56 | 0.90 | 22 | GLU |
| 2 | 110 | 0.37 | 0.74 | 25 | UMA |
Compared structures
- 2JFN · Crystal structure of Escherichia coli glutamate racemase in complex with L- Glutamate and… · the same entry in another collection · chain A against A, TM-score 1.00
- P22634 · AlphaFold monomer V2.0 prediction for glutamate racemase (P22634) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22634
- Elsewhere: RCSB PDB 2JFN · PDBe 2JFN · UniProt P22634
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