Research workbench
Crystal structure of recombinant dioclea guianensis lectin complexed with 5-bromo-4-chloro-3-indolyl-a-D-mannose
Analyse Crystal structure of recombinant dioclea guianensis lectin complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JDZ
- Type
- protein
- Length
- 234 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin alpha chain
- UniProt
- P81637
- Ligands
- XMM, MN, CA, CD
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lectin alpha chain | protein | 234 | 4% helix, 45% strand | P81637 |
Ligands and binding sites
- XMM · 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside · ligand · chains A
- MN · Manganese (II) ion · metal · 5 copies · chains A
- CA · Calcium ion · metal · chains A
- CD · Cadmium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2JDZ · Crystal structure of recombinant Dioclea guianensis lectin complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
- P81637 · AlphaFold monomer V2.0 prediction for lectin alpha chain (P81637) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81637
- Elsewhere: RCSB PDB 2JDZ · PDBe 2JDZ · UniProt P81637
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