Research workbench
Crystal structure of thermotoga maritima ribosome recycling factor, rrf
Analyse Crystal structure of thermotoga maritima ribosome recycling factor, rrf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DD5
- Type
- protein
- Length
- 184 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosome recycling factor
- UniProt
- Q9X1B9
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome recycling factor | protein | 184 | 62% helix, 14% strand | Q9X1B9 |
Ligands and binding sites
- ACY · Acetic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.28 | 0.73 | 13 | empty |
Compared structures
- 1DD5 · Crystal structure of thermotoga maritima ribosome recycling factor, rrf · the same entry in another collection · chain A against A, TM-score 1.00
- Q9X1B9 · AlphaFold monomer V2.0 prediction for ribosome-recycling factor (Q9X1B9) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1B9
- Elsewhere: RCSB PDB 1DD5 · PDBe 1DD5 · UniProt Q9X1B9
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