Research workbench
Crystal structure of the mutant H573A of the nuclease domain of COLE7 in complex with IM7
Analyse Crystal structure of the mutant H573A of the nuclease domain of COLE7 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JB0
- Type
- protein
- Length
- 206 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Colicin E7 immunity protein; Colicin E7
- EC
- 3.1.-.-
- UniProt
- Q03708, Q47112
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Colicin E7 immunity protein (EC 3.1.-.-) | protein | 84 | 60% helix, 0% strand | Q03708 |
| B | Colicin E7 (EC 3.1.-.-) | protein | 122 | 40% helix, 18% strand | Q47112 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 144 | 0.46 | 0.77 | 22 | empty |
| 2 | 82 | 0.37 | 0.77 | 13 | empty |
| 3 | 81 | 0.29 | 0.72 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 749 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 2JB0 · Crystal structure of the mutant H573A of the nuclease domain of COLE7 in complex with IM7 · the same entry in another collection · chain B against B, TM-score 1.00
- Q03708 · AlphaFold monomer V2.0 prediction for colicin-E7 immunity protein (Q03708) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q47112 · AlphaFold monomer V2.0 prediction for colicin-E7 (Q47112) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03708
- Every structure of UniProt Q47112
- Elsewhere: RCSB PDB 2JB0 · PDBe 2JB0 · UniProt Q03708 · UniProt Q47112
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.