Research workbench
Structure of the rnai polymerase from neurospora crassa
Analyse Structure of the rnai polymerase from neurospora crassa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2J7O
- Type
- protein
- Length
- 934 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA dependent RNA polymerase
- UniProt
- Q9Y7G6
- Ligands
- MG
- Pockets
- 15 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA dependent RNA polymerase | protein | 934 | 40% helix, 17% strand | Q9Y7G6 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 409 | 0.66 | 0.79 | 50 | empty |
| 2 | 510 | 0.63 | 0.76 | 52 | empty |
| 3 | 107 | 0.61 | 0.87 | 25 | empty |
| 4 | 148 | 0.60 | 0.84 | 24 | empty |
| 5 | 157 | 0.57 | 0.81 | 24 | empty |
Compared structures
- 2J7O · Structure of the rnai polymerase from neurospora crassa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y7G6
- Elsewhere: RCSB PDB 2J7O · PDBe 2J7O · UniProt Q9Y7G6
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