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Structure of an FTSY:GDP complex

Analyse Structure of an FTSY:GDP complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2IYL
Type: protein
Length: 271 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell division protein ftsy
UniProt: P83749
Ligands: GDP, SO4
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D	Cell division protein ftsy	protein	271	46% helix, 13% strand	P83749

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains D
SO4 · Sulfate ion · ion · 2 copies · chains D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	165	0.47	0.76	23	empty
2	58	0.30	0.75	17	empty
3	63	0.28	0.73	17	empty

Compared structures

2IYL · Structure of an FtsY:GDP complex · the same entry in another collection · chain D against D, TM-score 1.00
P83749 · AlphaFold monomer V2.0 prediction for signal recognition particle receptor ftsy (P83749) · a predicted model of the same protein · chain D against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P83749
Elsewhere: RCSB PDB 2IYL · PDBe 2IYL · UniProt P83749

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