Research workbench
SENP1 native structure
Analyse SENP1 native structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IYC
- Type
- protein
- Length
- 452 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sentrin-specific protease 1
- EC
- 3.4.22.-
- UniProt
- Q9P0U3
- Pockets
- 7 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sentrin-specific protease 1 (EC 3.4.22.-) | protein | 226 | 44% helix, 17% strand | Q9P0U3 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.57 | 0.81 | 28 | empty |
| 2 | 201 | 0.45 | 0.74 | 28 | empty |
| 3 | 87 | 0.40 | 0.77 | 15 | empty |
| 4 | 98 | 0.40 | 0.76 | 20 | empty |
| 5 | 89 | 0.37 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 572 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P0U3
- Elsewhere: RCSB PDB 2IYC · PDBe 2IYC · UniProt Q9P0U3
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