Research workbench
Short chain specific acyl-CoA oxidase from arabidopsis thaliana, ACX4
Analyse Short chain specific acyl-CoA oxidase from arabidopsis thaliana, ACX4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IX6
- Type
- protein
- Length
- 2,496 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-coenzyme a oxidase 4, peroxisomal
- EC
- 1.3.3.6
- UniProt
- Q96329
- Ligands
- FAD
- Pockets
- 18 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Acyl-coenzyme a oxidase 4, peroxisomal (EC 1.3.3.6) | protein | 416 | 51% helix, 14% strand | Q96329 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 6 copies · chains A, C, B, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
18 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 771 | 0.85 | 0.88 | 68 | FAD |
| 2 | 760 | 0.85 | 0.88 | 66 | FAD |
| 3 | 758 | 0.85 | 0.88 | 75 | FAD |
| 4 | 738 | 0.85 | 0.88 | 68 | FAD |
| 5 | 1178 | 0.84 | 0.85 | 87 | empty |
Interfaces
9 interfaces between chains.
- A–C · 3714 Ų buried · 54 hydrogen bonds · protein-protein
- B–E · 3656 Ų buried · 52 hydrogen bonds · protein-protein
- D–F · 3607 Ų buried · 57 hydrogen bonds · protein-protein
- E–F · 2208 Ų buried · 34 hydrogen bonds · protein-protein
- B–D · 2181 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 2IX6 · Short chain specific acyl-CoA oxidase from arabidopsis thaliana, ACX4 · the same entry in another collection · chain F against F, TM-score 1.00
- Q96329 · AlphaFold monomer V2.0 prediction for acyl-coenzyme a oxidase 4, peroxisomal (Q96329) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96329
- Elsewhere: RCSB PDB 2IX6 · PDBe 2IX6 · UniProt Q96329
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