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Rat phosphatidylethanolamine-binding protein

Analyse Rat phosphatidylethanolamine-binding protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2IQY
Type: protein
Length: 190 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphatidylethanolamine-binding protein 1
UniProt: P31044
Ligands: CA, CL
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphatidylethanolamine-binding protein 1	protein	190	15% helix, 27% strand	P31044

Ligands and binding sites

CA · Calcium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.42	0.80	17	empty

Compared structures

2IQY · Rat Phosphatidylethanolamine-Binding Protein · the same entry in another collection · chain A against A, TM-score 1.00
P31044 · AlphaFold monomer V2.0 prediction for phosphatidylethanolamine- binding protein 1 (P31044) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P31044
Elsewhere: RCSB PDB 2IQY · PDBe 2IQY · UniProt P31044

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