Research workbench
Structure of the full-lenght enzyme I of the pts system from staphylococcus carnosus
Analyse Structure of the full-lenght enzyme I of the pts system from staphylococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HRO
- Type
- protein
- Length
- 551 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoenolpyruvate-protein phosphotransferase
- EC
- 2.7.3.9
- UniProt
- P23533
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoenolpyruvate-protein phosphotransferase (EC 2.7.3.9) | protein | 551 | 50% helix, 9% strand | P23533 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 720 | 0.74 | 0.79 | 76 | empty |
| 2 | 138 | 0.57 | 0.83 | 37 | empty |
| 3 | 151 | 0.52 | 0.80 | 24 | SO4 |
Compared structures
- 2HRO · Structure of the full-lenght Enzyme I of the PTS system from Staphylococcus carnosus · the same entry in another collection · chain A against A, TM-score 1.00
- P23533 · AlphaFold monomer V2.0 prediction for phosphoenolpyruvate-protein phosphotransferase… · a predicted model of the same protein · chain A against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23533
- Elsewhere: RCSB PDB 2HRO · PDBe 2HRO · UniProt P23533
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