Research workbench
Crystal structure of a FAD-binding protein (MLL6688) from mesorhizobium loti at 1.95 a resolution
Analyse Crystal structure of a FAD-binding protein (MLL6688) from mesorhizobium loti at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HQ9
- Type
- protein
- Length
- 273 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MLL6688 protein
- UniProt
- Q988L5
- Ligands
- FAD, CL
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MLL6688 protein | protein | 135 | 29% helix, 50% strand | Q988L5 |
| B | MLL6688 protein | protein | 138 | 26% helix, 47% strand | Q988L5 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 804 | 0.77 | 0.81 | 75 | FAD, EDO |
Interfaces
1 interface between chains.
- A–B · 1361 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2HQ9 · Crystal structure of a fad-binding protein (mll6688) from mesorhizobium loti at 1.95 A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q988L5
- Elsewhere: RCSB PDB 2HQ9 · PDBe 2HQ9 · UniProt Q988L5
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