Research workbench
NMR solution structure of the 5S rRNA E-LOOP/L25 complex
Analyse NMR solution structure of the 5S rRNA E-LOOP/L25 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1D6K
- Type
- protein + RNA
- Length
- 131 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5S rRNA E-loop (5SE); Ribosomal protein L25
- UniProt
- P68919
- Pockets
- 1 · best druggability 0.37
Structure
solution nmr · 2 distinct chains · 22% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5S rRNA E-loop (5SE) | rna | 37 | — | — |
| A | Ribosomal protein L25 | protein | 94 | 22% helix, 44% strand | P68919 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.37 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- B–A · 905 Ų buried · 31 hydrogen bonds · protein-nucleic
Compared structures
- 1D6K · NMR solution structure of the 5S rRNA E-LOOP/L25 complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68919
- Elsewhere: RCSB PDB 1D6K · PDBe 1D6K · UniProt P68919
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