Research workbench
Crystal structure of an RNA racemate
Analyse Crystal structure of an RNA racemate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GQ5
- Type
- RNA
- Length
- 32 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3')
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| K, L, M, N | RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') | rna | 8 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
5 interfaces between chains.
- K–L · 436 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- M–N · 429 Ų buried · 36 hydrogen bonds · nucleic-nucleic
- L–M · 117 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- K–N · 116 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- K–M · 85 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 32 modified (nucleotide modification).
Compared structures
- 2GQ5 · Crystal structure of an RNA racemate · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2GQ5 · PDBe 2GQ5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.