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Solution structure of two-electron reduced megasphaera elsdenii flavodoxin

Analyse Solution structure of two-electron reduced megasphaera elsdenii flavodoxin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2FZ5
Type: protein
Length: 137 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flavodoxin
UniProt: P00321
Ligands: FNR
Pockets: 1 · best druggability 0.31

Structure

solution nmr · 1 distinct chain · 41% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flavodoxin	protein	137	41% helix, 25% strand	P00321

Ligands and binding sites

FNR · 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydro-2H-benzo[g]pteridin-1-id-10(5H)-yl)-5-O-phosphonato-D-ribitol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	66	0.31	0.75	20	FNR

Compared structures

2FZ5 · Solution structure of two-electron reduced Megasphaera elsdenii flavodoxin · the same entry in another collection · chain A against A, TM-score 1.00
P00321 · AlphaFold monomer V2.0 prediction for flavodoxin (P00321) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00321
Elsewhere: RCSB PDB 2FZ5 · PDBe 2FZ5 · UniProt P00321

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