Research workbench
High resolution glucose bound crystal structure of ggbp
Analyse High resolution glucose bound crystal structure of ggbp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2FVY
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-galactose-binding periplasmic protein
- UniProt
- P0AEE5
- Ligands
- BGC, CA, CO2
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-galactose-binding periplasmic protein | protein | 305 | 45% helix, 20% strand | P0AEE5 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
- CO2 · Carbon dioxide · ion · chains A
- ACT · Acetate ion · additive · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.30 | 0.75 | 16 | empty |
Compared structures
- 2FVY · High Resolution Glucose Bound Crystal Structure of GGBP · the same entry in another collection · chain A against A, TM-score 1.00
- P0AEE5 · AlphaFold monomer V2.0 prediction for D-galactose-binding periplasmic protein (P0AEE5) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEE5
- Elsewhere: RCSB PDB 2FVY · PDBe 2FVY · UniProt P0AEE5
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