Research workbench
Crystal structure of the F7A mutant of the cytochrome C551 from pseudomonas aeruginosa
Analyse Crystal structure of the F7A mutant of the cytochrome C551 from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2EXV
- Type
- protein
- Length
- 163 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C-551
- UniProt
- P00099
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C-551 | protein | 82 | 50% helix, 2% strand | P00099 |
| C | Cytochrome C-551 | protein | 81 | 51% helix, 2% strand | P00099 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 567 | 0.81 | 0.86 | 73 | HEC |
Interfaces
1 interface between chains.
- A–C · 264 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (heme c attachment).
Compared structures
- 2EXV · Crystal structure of the F7A mutant of the cytochrome c551 from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
- P00099 · AlphaFold monomer V2.0 prediction for cytochrome C-551 (P00099) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00099
- Elsewhere: RCSB PDB 2EXV · PDBe 2EXV · UniProt P00099
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