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Crystal structure of asn to gln mutant of winged bean chymotrypsin inhibitor protein

Analyse Crystal structure of asn to gln mutant of winged bean chymotrypsin inhibitor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2ESU
Type
protein
Length
173 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Chymotrypsin inhibitor 3
UniProt
P10822
Ligands
NI, SO4
Pockets
2 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 42% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AChymotrypsin inhibitor 3protein1733% helix, 42% strandP10822

Ligands and binding sites

  • NI · Nickel (II) ion · metal · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1520.280.7511empty
2540.270.7414empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • 2ESU · Crystal structure of Asn to Gln mutant of Winged Bean Chymotrypsin Inhibitor protein · the same entry in another collection · chain A against A, TM-score 1.00
  • P10822 · AlphaFold monomer V2.0 prediction for chymotrypsin inhibitor 3 (P10822) · a predicted model of the same protein · chain A against A, TM-score 0.97

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