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Solution structure of the RANBD1 domain from human nucleoporin 50 kda

Analyse Solution structure of the RANBD1 domain from human nucleoporin 50 kda in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2EC1
Type: protein
Length: 118 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoporin 50 kda
UniProt: Q9UKX7
Pockets: 1 · best druggability 0.63

Structure

solution nmr · 1 distinct chain · 14% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoporin 50 kda	protein	118	14% helix, 40% strand	Q9UKX7

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.63	0.93	20	empty

Compared structures

2EC1 · Solution structure of the RanBD1 domain from human Nucleoporin 50 kDa · the same entry in another collection · chain A against A, TM-score 1.00
Q9UKX7 · AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP50 (Q9UKX7) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UKX7
Elsewhere: RCSB PDB 2EC1 · PDBe 2EC1 · UniProt Q9UKX7

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