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Solution structure of RNA binding domain in synaptojanin 1

Analyse Solution structure of RNA binding domain in synaptojanin 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DNR
Type: protein
Length: 91 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Synaptojanin-1
EC: 3.1.3.36
UniProt: O43426
Pockets: 1 · best druggability 0.32

Structure

solution nmr · 1 distinct chain · 24% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Synaptojanin-1 (EC 3.1.3.36)	protein	91	24% helix, 30% strand	O43426

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.32	0.77	15	empty

Compared structures

2DNR · Solution structure of RNA binding domain in Synaptojanin 1 · the same entry in another collection · chain A against A, TM-score 1.00
O43426 · AlphaFold monomer V2.0 prediction for synaptojanin-1 (O43426) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O43426
Elsewhere: RCSB PDB 2DNR · PDBe 2DNR · UniProt O43426

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