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Crystal structure of mouse galectin-9 N-terminal crd in complex with lactose

Analyse Crystal structure of mouse galectin-9 N-terminal crd in complex with lactose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2D6M
Type: protein
Length: 302 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin, galactose binding, soluble 9
UniProt: Q99L83
Ligands: GLC, GAL
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Lectin, galactose binding, soluble 9	protein	151	2% helix, 56% strand	Q99L83

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A, B
GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.28	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 65 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

2D6M · Crystal structure of mouse galectin-9 N-terminal CRD in complex with lactose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99L83
Elsewhere: RCSB PDB 2D6M · PDBe 2D6M · UniProt Q99L83

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