Research workbench
Crystal structure of mouse amf / S6P complex
Analyse Crystal structure of mouse amf / S6P complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CXQ
- Type
- protein
- Length
- 1,114 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucose-6-phosphate isomerase
- EC
- 5.3.1.9
- UniProt
- P06745
- Ligands
- S6P
- Pockets
- 13 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glucose-6-phosphate isomerase (EC 5.3.1.9) | protein | 557 | 54% helix, 13% strand | P06745 |
Ligands and binding sites
- S6P · D-sorbitol-6-phosphate · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1029 | 0.77 | 0.79 | 64 | empty |
| 2 | 350 | 0.70 | 0.83 | 47 | S6P |
| 3 | 227 | 0.69 | 0.86 | 45 | S6P |
| 4 | 154 | 0.54 | 0.80 | 16 | empty |
| 5 | 59 | 0.45 | 0.83 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 6661 Ų buried · 92 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06745
- Elsewhere: RCSB PDB 2CXQ · PDBe 2CXQ · UniProt P06745
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