Research workbench
R117H mutant rat anionic trypsin complexed with bovine pancreatic trypsin inhibitor (bpti)
Analyse R117H mutant rat anionic trypsin complexed with bovine pancreatic trypsin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1CO7
- Type
- protein
- Length
- 264 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trypsin II; Bovine pancreatic trypsin inhibitor
- EC
- 3.4.21.4
- UniProt
- P00763, P00974
- Ligands
- CA
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | Trypsin II (EC 3.4.21.4) | protein | 223 | 10% helix, 36% strand | P00763 |
| I | Bovine pancreatic trypsin inhibitor | protein | 41 | 12% helix, 34% strand | P00974 |
Ligands and binding sites
- CA · Calcium ion · metal · chains E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.39 | 0.77 | 20 | empty |
| 2 | 55 | 0.31 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- E–I · 716 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 1CO7 · R117H mutant rat anionic trypsin complexed with bovine pancreatic trypsin inhibitor (BPTI) · the same entry in another collection · chain E against E, TM-score 1.00
- P00763 · AlphaFold monomer V2.0 prediction for anionic trypsin-2 (P00763) · a predicted model of the same protein · chain E against A, TM-score 1.00
- P00974 · AlphaFold monomer V2.0 prediction for pancreatic trypsin inhibitor (P00974) · a predicted model of the same protein · chain I against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00763
- Every structure of UniProt P00974
- Elsewhere: RCSB PDB 1CO7 · PDBe 1CO7 · UniProt P00763 · UniProt P00974
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