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Peridinin-chlorophyll a protein, high-salt form

Analyse Peridinin-chlorophyll a protein, high-salt form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2C9E
Type: protein
Length: 317 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peridinin-chlorophyll a protein
UniProt: O76183
Ligands: PID, CLA, DGD, MG
Pockets: 4 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peridinin-chlorophyll a protein	protein	317	76% helix, 0% strand	O76183

Ligands and binding sites

PID · Peridinin · ligand · 6 copies · chains A
CLA · Chlorophyll A · ligand · 2 copies · chains A
DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · 2 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1056	0.72	0.75	64	CLA, PID, DGD
2	935	0.71	0.75	68	PID
3	339	0.57	0.75	35	PID
4	52	0.30	0.76	13	empty

Compared structures

2C9E · Peridinin-chlorophyll a protein, high-salt form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O76183
Elsewhere: RCSB PDB 2C9E · PDBe 2C9E · UniProt O76183

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