Ligand · PID

PID · Peridinin

PID, Peridinin (C39 H50 O7, 630.8 g/mol), in the MolNFT structures on GenesisL1: bound in 20 records (13 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: PID
Formula: C39 H50 O7
Class: ligand
Structures: 20
PDB entries: 13

Binding sites

PID in 20 structures; the first of them:

1PPR · Peridinin-chlorophyll-protein of amphidinium carterae · PID M611 · binds PHE17, VAL21, TRP23, ASN25, GLY26, PHE28, LEU29, PRO120 and 12 more
2C9E · Peridinin-chlorophyll a protein, high-salt form · PID A1329 · binds PHE21, TRP23, ILE29, ALA30, ILE33, GLN123, GLY124, LEU126 and 10 more
2X1Z · Structure of Peridinin-Chlorophyll-Protein reconstituted with Chl-d · PID M611 · binds PHE17, VAL21, TRP23, ASN25, GLY26, PHE28, LEU29, PRO120 and 7 more
2X20 · Structure of Peridinin-Chlorophyll-Protein reconstituted with Chl-b · PID M611 · binds PHE17, VAL21, TRP23, ASN25, GLY26, PHE28, LEU29, PRO120 and 7 more
2X21 · Structure of Peridinin-Chlorophyll-Protein reconstituted with BChl-a · PID M611 · binds PHE17, VAL21, TRP23, ASN25, GLY26, PHE28, LEU29, PRO120 and 7 more

Residues it binds most

LEU 218, VAL 174, MET 200, ILE 180, ALA 165, PHE 194, TYR 172, LYS 165, GLY 135, PRO 114 (residue and the binding sites it lines).

Found with

CLA · Chlorophyll A
DGD · Digalactosyl diacyl glycerol (dgdg)
CL · Chloride ion
CD · Cadmium ion
K · Potassium ion
NA · Sodium ion
PEG · Di(hydroxyethyl)ether
BCR · Beta-carotene
DD6 · (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
J7Z · (2S)-3-[(6-O-alpha-D-galactopyranosyl-beta-D-galactopyranosyl)oxy]-2-[(3Z,6Z,9Z,12Z,15Z)-octadeca-3,6,9,12,15-pentaenoyloxy]propyl (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate
LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
LMG · 1,2-distearoyl-monogalactosyl-diglyceride

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