GL1X · GenesisL1 explorer

Ligand · DD6

DD6 · (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol

DD6, (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (C40 H54 O3, 582.9 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (6 PDB entries). Every binding site with its residues within…

Component
DD6
Formula
C40 H54 O3
Class
ligand
Structures
8
PDB entries
6

Binding sites

DD6 in 8 structures; the first of them:

  • 6A2W · Crystal structure of fucoxanthin chlorophyll a/c complex from Phaeodactylum tricornutum · DD6 A308 · binds GLN90, PHE94, SER101, VAL102
  • 6LY5 · Organization and energy transfer in a huge diatom PSI-FCPI supercomplex · DD6 A301 · binds LYS179, ARG182, LEU183, LEU186, VAL197, GLN120, GLY121, SER124 and 2 more
  • 7VD5 · Structure of C2S2M2-type PSII-FCPII supercomplex from diatom · DD6 16312 · binds VAL40, PRO42, LEU43, ASN168, ARG171, ALA172, MET175, ILE186 and 1 more

Residues it binds most

LEU 92, ALA 85, PHE 86, ILE 82, MET 85, PRO 76, VAL 65, GLY 55, HIS 69, ASP 60 (residue and the binding sites it lines).

Found with

  • A86 · (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
  • CLA · Chlorophyll A
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • KC1 · Chlorophyll c1
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol
  • BCR · Beta-carotene
  • UNL · Unknown ligand
  • LMT · Dodecyl-beta-D-maltoside
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster

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