Research workbench
HIV-1 capsid C-terminal domain in complex with an inhibitor of particle assembly
Analyse HIV-1 capsid C-terminal domain in complex with an inhibitor of particle assembly in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BUO
- Type
- protein
- Length
- 96 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 capsid protein; Inhibitor of capsid assembly
- UniProt
- Q72497
Structure
x-ray diffraction · 2 distinct chains · 59% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 capsid protein | protein | 84 | 58% helix, 0% strand | Q72497 |
| T | Inhibitor of capsid assembly | protein | 12 | 67% helix, 0% strand | — |
Ligands and binding sites
- ACY · Acetic acid · additive · chains A, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–T · 658 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 2BUO · HIV-1 capsid C-terminal domain in complex with an inhibitor of particle assembly · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72497
- Elsewhere: RCSB PDB 2BUO · PDBe 2BUO · UniProt Q72497
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