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Lectin from ralstonia solanacearum complexed with xyloglucan fragment

Analyse Lectin from ralstonia solanacearum complexed with xyloglucan fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2BS6
Type: protein
Length: 266 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin
UniProt: Q8XXK6
Ligands: FUC, XYS, GAL
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 68% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Lectin	protein	89	0% helix, 69% strand	Q8XXK6
B	Lectin	protein	88	0% helix, 68% strand	Q8XXK6

Ligands and binding sites

FUC · alpha-L-fucopyranose · sugar · 6 copies · chains A, B, C
XYS · alpha-D-xylopyranose · sugar · 3 copies · chains A, B, C
GAL · beta-D-galactopyranose · sugar · 3 copies · chains A, B, C
GOL · Glycerol · additive · 6 copies · chains A, C, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	726	0.74	0.80	78	GOL

Interfaces

3 interfaces between chains.

A–B · 734 Å² buried · 8 hydrogen bonds · protein-protein
A–C · 723 Å² buried · 6 hydrogen bonds · protein-protein
B–C · 701 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

2BS6 · Lectin from ralstonia solanacearum complexed with xyloglucan fragment · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8XXK6
Elsewhere: RCSB PDB 2BS6 · PDBe 2BS6 · UniProt Q8XXK6

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