Research workbench
Anthocyanidin synthase from arabidopsis thaliana complexed with naringenin
Analyse Anthocyanidin synthase from arabidopsis thaliana complexed with naringenin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BRT
- Type
- protein
- Length
- 348 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Leucoanthocyanidin dioxygenase
- EC
- 1.14.11.19
- UniProt
- Q96323
- Ligands
- AKG, NAR, FE2
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leucoanthocyanidin dioxygenase (EC 1.14.11.19) | protein | 348 | 36% helix, 21% strand | Q96323 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · chains A
- NAR · Naringenin · ligand · chains A
- FE2 · Fe (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 684 | 0.73 | 0.79 | 50 | FE2, AKG, NAR |
| 2 | 96 | 0.35 | 0.74 | 18 | empty |
| 3 | 62 | 0.31 | 0.76 | 13 | empty |
Compared structures
- 2BRT · ANTHOCYANIDIN SYNTHASE FROM ARABIDOPSIS THALIANA COMPLEXED with naringenin · the same entry in another collection · chain A against A, TM-score 1.00
- Q96323 · AlphaFold monomer V2.0 prediction for leucoanthocyanidin dioxygenase (Q96323) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96323
- Elsewhere: RCSB PDB 2BRT · PDBe 2BRT · UniProt Q96323
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