Research workbench
Dengue virus RNA helicase at 2.4A
Analyse Dengue virus RNA helicase at 2.4A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BMF
- Type
- protein
- Length
- 885 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA helicase
- UniProt
- Q91H74
- Pockets
- 6 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA helicase | protein | 442 | 34% helix, 17% strand | Q91H74 |
| B | RNA helicase | protein | 443 | 34% helix, 18% strand | Q91H74 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1184 | 0.82 | 0.83 | 83 | empty |
| 2 | 1148 | 0.82 | 0.83 | 85 | empty |
| 3 | 288 | 0.70 | 0.84 | 42 | empty |
| 4 | 126 | 0.64 | 0.88 | 25 | empty |
| 5 | 53 | 0.36 | 0.79 | 12 | empty |
Compared structures
- 2BMF · Dengue virus RNA helicase at 2.4A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91H74
- Elsewhere: RCSB PDB 2BMF · PDBe 2BMF · UniProt Q91H74
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