Research workbench
Conformational flexibility revealed by the crystal structure of a crenarchaeal rada
Analyse Conformational flexibility revealed by the crystal structure of a crenarchaeal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BKE
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- Q55075
- Ligands
- CL
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 293 | 43% helix, 20% strand | Q55075 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.35 | 0.76 | 22 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 2BKE · Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA · the same entry in another collection · chain A against A, TM-score 1.00
- Q55075 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (Q55075) · a predicted model of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55075
- Elsewhere: RCSB PDB 2BKE · PDBe 2BKE · UniProt Q55075
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