Research workbench
Structure of the N-terminal domain of fragile X mental retardation protein
Analyse Structure of the N-terminal domain of fragile X mental retardation protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BKD
- Type
- protein
- Length
- 134 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fragile X mental retardation 1 protein
- UniProt
- Q06787
- Pockets
- 2 · best druggability 0.40
Structure
solution nmr · 1 distinct chain · 2% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | Fragile X mental retardation 1 protein | protein | 134 | 2% helix, 39% strand | Q06787 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.40 | 0.75 | 17 | empty |
| 2 | 72 | 0.35 | 0.76 | 16 | empty |
Modifications
Observed in the structure: 3 modified (nonstandard).
Compared structures
- 2BKD · Structure of the N-terminal domain of Fragile X Mental Retardation Protein · the same entry in another collection · chain N against N, TM-score 1.00
- Q06787 · AlphaFold monomer V2.0 prediction for synaptic functional regulator FMR1 (Q06787) · a predicted model of the same protein · chain N against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06787
- Elsewhere: RCSB PDB 2BKD · PDBe 2BKD · UniProt Q06787
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