Research workbench
Nikr in open conformation and nickel bound to high-affinity sites
Analyse Nikr in open conformation and nickel bound to high-affinity sites in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BJ1
- Type
- protein
- Length
- 264 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nickel responsive regulator
- UniProt
- O58316
- Ligands
- NI, CL
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Nickel responsive regulator | protein | 132 | 43% helix, 33% strand | O58316 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 585 | 0.70 | 0.79 | 53 | empty |
Interfaces
1 interface between chains.
- A–B · 2786 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 2BJ1 · Nikr in open conformation and nickel bound to high-affinity sites · the same entry in another collection · chain A against A, TM-score 1.00
- O58316 · AlphaFold monomer V2.0 prediction for putative nickel-responsive regulator (O58316) · a predicted model of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58316
- Elsewhere: RCSB PDB 2BJ1 · PDBe 2BJ1 · UniProt O58316
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.