Research workbench
Atomic resolution structure of the double mutant (K53,56M) of bovine pancreatic phospholipase A2
Analyse Atomic resolution structure of the double mutant (K53,56M) of bovine pancreatic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BAX
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2
- EC
- 3.1.1.4
- UniProt
- P00593
- Ligands
- CA, CL
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 (EC 3.1.1.4) | protein | 123 | 49% helix, 9% strand | P00593 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- CL · Chloride ion · ion · chains A
- MRD · (4R)-2-methylpentane-2,4-diol · additive · 4 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.57 | 0.85 | 17 | MRD |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 2BAX · Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic… · the same entry in another collection · chain A against A, TM-score 1.00
- P00593 · AlphaFold monomer V2.0 prediction for phospholipase A2 (P00593) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00593
- Elsewhere: RCSB PDB 2BAX · PDBe 2BAX · UniProt P00593
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