Research workbench
Crystal structure of a putative endoribonuclease (TM0215) from thermotoga maritima MSB8 at 2.30 a resolution
Analyse Crystal structure of a putative endoribonuclease (TM0215) from thermotoga… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2B33
- Type
- protein
- Length
- 253 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein synthesis inhibitor, putative
- UniProt
- Q9WY58
- Ligands
- CA
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein synthesis inhibitor, putative | protein | 127 | 31% helix, 30% strand | Q9WY58 |
| B | Protein synthesis inhibitor, putative | protein | 126 | 31% helix, 30% strand | Q9WY58 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.59 | 0.83 | 30 | empty |
| 2 | 57 | 0.36 | 0.79 | 15 | empty |
| 3 | 58 | 0.33 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 513 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 2B33 · Crystal structure of a putative endoribonuclease (TM0215) from thermotoga maritima MSB8… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WY58
- Elsewhere: RCSB PDB 2B33 · PDBe 2B33 · UniProt Q9WY58
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