Research workbench
Thermostable cgtase from thermoanaerobacterium thermosulfurigenes EM1 at pH 8.0.
Analyse Thermostable cgtase from thermoanaerobacterium thermosulfurigenes EM1 at pH 8.0. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1CIU
- Type
- protein
- Length
- 683 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclodextrin glycosyltransferase
- EC
- 2.4.1.19
- UniProt
- P26827
- Ligands
- CA
- Pockets
- 5 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclodextrin glycosyltransferase (EC 2.4.1.19) | protein | 683 | 21% helix, 30% strand | P26827 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.72 | 0.98 | 24 | empty |
| 2 | 193 | 0.60 | 0.82 | 32 | empty |
| 3 | 358 | 0.60 | 0.77 | 40 | empty |
| 4 | 146 | 0.44 | 0.76 | 23 | empty |
| 5 | 53 | 0.35 | 0.79 | 14 | empty |
Compared structures
- 1CIU · Thermostable cgtase from thermoanaerobacterium thermosulfurigenes EM1 at pH 8.0. · the same entry in another collection · chain A against A, TM-score 1.00
- P26827 · AlphaFold monomer V2.0 prediction for cyclomaltodextrin glucanotransferase (P26827) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P26827
- Elsewhere: RCSB PDB 1CIU · PDBe 1CIU · UniProt P26827
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