Research workbench
Crystal structure of medicago truncatula UGT71G1
Analyse Crystal structure of medicago truncatula UGT71G1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ACV
- Type
- protein
- Length
- 917 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Triterpene udp-glucosyl transferase UGT71G1
- EC
- 2.4.1.-
- UniProt
- Q5IFH7
- Ligands
- UDP
- Pockets
- 6 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Triterpene udp-glucosyl transferase UGT71G1 (EC 2.4.1.-) | protein | 461 | 47% helix, 15% strand | Q5IFH7 |
| B | Triterpene udp-glucosyl transferase UGT71G1 (EC 2.4.1.-) | protein | 456 | 46% helix, 15% strand | Q5IFH7 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1047 | 0.83 | 0.84 | 107 | UDP |
| 2 | 853 | 0.82 | 0.84 | 96 | UDP |
| 3 | 88 | 0.68 | 0.93 | 19 | empty |
| 4 | 62 | 0.41 | 0.81 | 22 | empty |
| 5 | 101 | 0.41 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 634 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 2ACV · Crystal Structure of Medicago truncatula UGT71G1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5IFH7
- Elsewhere: RCSB PDB 2ACV · PDBe 2ACV · UniProt Q5IFH7
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