Research workbench
Crystal structure of mycobacterium tuberculosis guanylate kinase in complex with gmp
Analyse Crystal structure of mycobacterium tuberculosis guanylate kinase in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZNX
- Type
- protein
- Length
- 182 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanylate kinase
- EC
- 2.7.4.8
- UniProt
- P0A5I4
- Ligands
- 5GP
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanylate kinase (EC 2.7.4.8) | protein | 182 | 43% helix, 22% strand | P0A5I4 |
Ligands and binding sites
- 5GP · Guanosine-5'-monophosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.43 | 0.74 | 24 | 5GP |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1ZNX · Crystal Structure Of Mycobacterium tuberculosis Guanylate Kinase In Complex With GMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A5I4
- Elsewhere: RCSB PDB 1ZNX · PDBe 1ZNX · UniProt P0A5I4
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