Research workbench
Crystal structure of the trehalulose synthase mutb from pseudomonas mesoacidophila mx-45 (monoclinic form)
Analyse Crystal structure of the trehalulose synthase mutb from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZJB
- Type
- protein
- Length
- 1,112 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trehalulose synthase
- EC
- 5.4.99.11
- UniProt
- Q2PS28
- Ligands
- CA
- Pockets
- 7 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Trehalulose synthase (EC 5.4.99.11) | protein | 556 | 34% helix, 19% strand | Q2PS28 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.75 | 0.98 | 18 | TRS |
| 2 | 81 | 0.73 | 0.97 | 19 | TRS |
| 3 | 50 | 0.71 | 0.99 | 16 | empty |
| 4 | 321 | 0.60 | 0.78 | 38 | empty |
| 5 | 284 | 0.60 | 0.78 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 225 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1ZJB · Crystal structure of the trehalulose synthase MutB from Pseudomonas mesoacidophila MX-45… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2PS28
- Elsewhere: RCSB PDB 1ZJB · PDBe 1ZJB · UniProt Q2PS28
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