Research workbench
Structure of the hypothetical oxidoreductase ycnd from bacillus subtilis
Analyse Structure of the hypothetical oxidoreductase ycnd from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZCH
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical oxidoreductase ycnd
- EC
- 1.-.-.-
- UniProt
- P94424
- Ligands
- FMN, CA, CL
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical oxidoreductase ycnd (EC 1.-.-.-) | protein | 249 | 52% helix, 12% strand | P94424 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- CA · Calcium ion · metal · chains A
- CL · Chloride ion · ion
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.44 | 0.73 | 27 | CL, FMN |
| 2 | 68 | 0.39 | 0.79 | 16 | empty |
Compared structures
- 1ZCH · Structure of the hypothetical oxidoreductase YcnD from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- P94424 · AlphaFold monomer V2.0 prediction for FMN reductase [NAD(P)H] (P94424) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P94424
- Elsewhere: RCSB PDB 1ZCH · PDBe 1ZCH · UniProt P94424
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