Research workbench

Crystal structure of conserved protein of unknown function AF0625

Analyse Crystal structure of conserved protein of unknown function AF0625 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YQE
Type: protein
Length: 282 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical UPF0204 protein AF0625
UniProt: O29630
Ligands: POP
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical UPF0204 protein AF0625	protein	282	35% helix, 26% strand	O29630

Ligands and binding sites

POP · Pyrophosphate 2- · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	138	0.54	0.81	24	POP
2	58	0.39	0.80	14	empty
3	76	0.34	0.75	16	empty

Compared structures

1YQE · Crystal Structure of Conserved Protein of Unknown Function AF0625 · the same entry in another collection · chain A against A, TM-score 1.00
O29630 · AlphaFold monomer V2.0 prediction for D-aminoacyl-tRNA deacylase (O29630) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O29630
Elsewhere: RCSB PDB 1YQE · PDBe 1YQE · UniProt O29630

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.