Research workbench
Subtilisin bpn' 8397+1 (E.C. 3.4.21.14) (mutant with met 50 replaced by phe, asn 76 replaced by asp, gly 169 replaced by ala, gln 206 replaced by cys, asn 218 replaced by ser and lys 256 replaced by tyr) (M50F, N76D, G169A, Q206C, N218S, and K256Y) in 35% dimethylformamide
Analyse Subtilisin bpn' 8397+1 (E.C. 3.4.21.14) (mutant with met 50 replaced by phe… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YJB
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Subtilisin 8397+1
- EC
- 3.4.21.14
- UniProt
- P00782
- Ligands
- CA
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Subtilisin 8397+1 (EC 3.4.21.14) | protein | 275 | 31% helix, 20% strand | P00782 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.36 | 0.75 | 23 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 1YJB · Subtilisin bpn' 8397+1 (E.C. 3.4.21.14) (mutant with met 50 replaced by phe, asn 76… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00782
- Elsewhere: RCSB PDB 1YJB · PDBe 1YJB · UniProt P00782
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