Research workbench
Crystal structure analysis of dispersin B
Analyse Crystal structure analysis of dispersin B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YHT
- Type
- protein
- Length
- 344 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dspb
- EC
- 3.2.1.52
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dspb (EC 3.2.1.52) | protein | 344 | 42% helix, 18% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.52 | 0.80 | 18 | empty |
| 2 | 82 | 0.40 | 0.78 | 16 | ACY, GOL |
| 3 | 51 | 0.37 | 0.80 | 15 | empty |
| 4 | 67 | 0.32 | 0.75 | 17 | empty |
Compared structures
- 1YHT · Crystal structure analysis of Dispersin B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YHT · PDBe 1YHT
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