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Feline panleukopenia virus empty capsid structure

Analyse Feline panleukopenia virus empty capsid structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1C8G
Type: protein
Length: 548 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Feline panleukopenia virus capsid
UniProt: P24840
Ligands: CA
Pockets: 9 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Feline panleukopenia virus capsid	protein	548	8% helix, 30% strand	P24840

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	920	0.73	0.77	104	empty
2	60	0.71	0.97	14	empty
3	73	0.66	0.93	24	empty
4	472	0.58	0.74	38	empty
5	76	0.48	0.83	24	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1C8G · Feline panleukopenia virus empty capsid structure · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24840
Elsewhere: RCSB PDB 1C8G · PDBe 1C8G · UniProt P24840

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